Add load_biomodel() and list_biomodels() for VCell server integration#36
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Add load_biomodel() and list_biomodels() for VCell server integration#36
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Implements load_biomodel(biomodel_id, api_client=None) which uses the VCell REST API to fetch and parse a BioModel. Public models work with the default anonymous client; private models accept an authenticated ApiClient. Replaces the old load_vcml_biomodel_id() URL-based approach. Also adds CLAUDE.md with project conventions and verification steps.
Add vc.list_biomodels() to return all accessible models as a list of dicts with id, name, and owner. Extend load_biomodel() to accept name and owner kwargs for searching by name. Both require an authenticated ApiClient. Update quickstart guide with authenticated workflow examples. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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Summary
Details
load_biomodel() supports three usage patterns:
Public model by ID (no auth needed)
bm = vc.load_biomodel("279851639")
Search by name (requires auth)
bm = vc.load_biomodel(name="Tutorial_MultiApp", owner="tutorial", api_client=client)
List all accessible models (requires auth)
models = vc.list_biomodels(api_client=client)
Test plan