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@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

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  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.2k 259

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 494 111

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 400 70

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 408 75

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 334 42

Repositories

Showing 10 of 253 repositories
  • single-cell-best-practices Public

    https://www.sc-best-practices.org

    theislab/single-cell-best-practices’s past year of commit activity
    Jupyter Notebook 1,170 259 76 3 Updated Mar 20, 2026
  • comparative_atlas Public

    Incremental Atlas Expansion with case-control scRNAseq data

    theislab/comparative_atlas’s past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Mar 20, 2026
  • scConcept Public

    Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction

    theislab/scConcept’s past year of commit activity
    Python 23 MIT 4 0 0 Updated Mar 20, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 8 0 1 0 Updated Mar 20, 2026
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI’s past year of commit activity
    Python 61 BSD-3-Clause 5 4 4 Updated Mar 20, 2026
  • perturbation-metrics Public
    theislab/perturbation-metrics’s past year of commit activity
    Jupyter Notebook 8 BSD-3-Clause 0 0 1 Updated Mar 19, 2026
  • lamin_dataloader Public
    theislab/lamin_dataloader’s past year of commit activity
    Python 0 2 0 0 Updated Mar 19, 2026
  • archmap_data Public
    theislab/archmap_data’s past year of commit activity
    Python 1 0 1 1 Updated Mar 19, 2026
  • archmap_doc Public
    theislab/archmap_doc’s past year of commit activity
    Python 0 0 0 0 Updated Mar 19, 2026
  • scanpydoc Public

    Collection of Sphinx extensions similar to (but more flexible than) numpydoc

    theislab/scanpydoc’s past year of commit activity
    Python 12 GPL-3.0 5 4 0 Updated Mar 17, 2026
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