Skip to content

Pull requests: nf-core/modules

New pull request New
192 Open 7,958 Closed
192 Open 7,958 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Whatshap/phase: add pedigree input
#11128 opened Apr 7, 2026 by tetedange13 Loading…
7 of 9 tasks
Eklipse topics migration
#11125 opened Apr 6, 2026 by EfraMP Loading…
8 of 17 tasks
Make lineages_topology output optional in FREYJA_UPDATE
#11124 opened Apr 6, 2026 by sam-baird Loading…
12 of 17 tasks
Add module: dorado/basecaller
#11122 opened Apr 6, 2026 by sahuno Loading…
9 of 11 tasks
9
Add new quilt2 module
#11121 opened Apr 5, 2026 by atrigila Loading…
12
Add module: modkit/localize
#11120 opened Apr 5, 2026 by sahuno Loading…
3 tasks done
feat: seqkit/sample nf-core module
#11119 opened Apr 5, 2026 by emmcauley Loading…
11 of 17 tasks
1
Add poppunk/createdb module
#11118 opened Apr 2, 2026 by cwoodside1278 Loading…
@cwoodside1278
6
feat: gridss/annotate nf-core module
#11117 opened Apr 2, 2026 by emmcauley Loading…
5 of 17 tasks
1
4
Add circlator/all module
#11116 opened Apr 2, 2026 by cwoodside1278 Loading…
11 of 14 tasks
1
@cwoodside1278
8
New module : portello
#11114 opened Apr 2, 2026 by sofiademmou Loading…
12 of 17 tasks
17
add methurator gtestimator and plot modules
#11110 opened Apr 1, 2026 by edogiuili Loading…
9 of 17 tasks
41
Add metamap for input/output in stringtie/merge Ready for Review
#11108 opened Apr 1, 2026 by Odulhin Loading…
1
@Odulhin
15
chore(deps): update dependency askimed/nf-test to v0.9.5 size/xs
#11099 opened Apr 1, 2026 by renovate bot Loading…
2 tasks
new module: vcfpartition Ready for Review
#11098 opened Mar 31, 2026 by camlloyd Loading…
11 of 17 tasks
1
11
add dds/createproject new module Adding a new module
#11094 opened Mar 31, 2026 by annaasklof • Draft
17 tasks
1
1
feat: civicpy/annotate module
#11079 opened Mar 27, 2026 by emmcauley • Draft
5 of 17 tasks
1
1
add batch testing
#11071 opened Mar 27, 2026 by mashehu Loading…
Update cellranger multi module to comply to nf-core guidelines
#11066 opened Mar 27, 2026 by mahesh-panchal • Draft
2 of 17 tasks
tabix/tabix: update module to support region-based VCF extraction
#11064 opened Mar 27, 2026 by luisas Loading…
12 of 17 tasks
21
Add snpclustering subworkflow
#11059 opened Mar 26, 2026 by dbaku42 Loading…
3 tasks done
11
New modules: Llamacpp-python/run and huggingface/download for allowing to run simple text workloads with local LLMs new module Adding a new module Ready for Review
#11053 opened Mar 26, 2026 by toniher Loading…
13 of 17 tasks
24
Bump CuteSV version
#11052 opened Mar 26, 2026 by awgymer Loading…
17 tasks
3
Masurca container-issue help wanted Extra attention is needed
#11049 opened Mar 25, 2026 by LiaOb21 • Draft
17 tasks
1
22
Big slice imp modules
#11034 opened Mar 24, 2026 by SkyLexS Loading…
9 of 14 tasks
25
ProTip! Exclude everything labeled bug with -label:bug.