Improve JSDoc comments with cross-references and clarifications

[jonathanhefner]

Key improvements:

• Add {@link} cross-references throughout the codebase to make API documentation navigable and help AI models understand relationships
• Use {@link module!Export} syntax for cross-module references
• Add backticks for inline code formatting (ResizeObserver, App, etc)
• Fix PostMessageTransport examples to show required two-argument form
• Clarify onteardown callback return type requirement
• Document React hooks cleanup behavior and Strict Mode considerations
• Add tool visibility example for registerAppTool
• Add CSP example for registerAppResource
• Fix notification direction documentation in spec.types.ts

TypeDoc config migrated from typedoc.json to typedoc.config.mjs to:

• Support custom @description block tag
• Add intentionallyNotExported for internal types
• Include src/server/index.ts entry point

[pkg-pr-new]

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@modelcontextprotocol/ext-apps

npm i https://pkg.pr.new/modelcontextprotocol/ext-apps/@modelcontextprotocol/ext-apps@254

@modelcontextprotocol/server-basic-react

npm i https://pkg.pr.new/modelcontextprotocol/ext-apps/@modelcontextprotocol/server-basic-react@254

@modelcontextprotocol/server-basic-vanillajs

npm i https://pkg.pr.new/modelcontextprotocol/ext-apps/@modelcontextprotocol/server-basic-vanillajs@254

@modelcontextprotocol/server-budget-allocator

npm i https://pkg.pr.new/modelcontextprotocol/ext-apps/@modelcontextprotocol/server-budget-allocator@254

@modelcontextprotocol/server-cohort-heatmap

npm i https://pkg.pr.new/modelcontextprotocol/ext-apps/@modelcontextprotocol/server-cohort-heatmap@254

@modelcontextprotocol/server-customer-segmentation

npm i https://pkg.pr.new/modelcontextprotocol/ext-apps/@modelcontextprotocol/server-customer-segmentation@254

@modelcontextprotocol/server-scenario-modeler

npm i https://pkg.pr.new/modelcontextprotocol/ext-apps/@modelcontextprotocol/server-scenario-modeler@254

@modelcontextprotocol/server-system-monitor

npm i https://pkg.pr.new/modelcontextprotocol/ext-apps/@modelcontextprotocol/server-system-monitor@254

@modelcontextprotocol/server-threejs

npm i https://pkg.pr.new/modelcontextprotocol/ext-apps/@modelcontextprotocol/server-threejs@254

@modelcontextprotocol/server-wiki-explorer

npm i https://pkg.pr.new/modelcontextprotocol/ext-apps/@modelcontextprotocol/server-wiki-explorer@254

commit: 51b4903

[ochafik]

Thanks! (would the spec types trigger updates in generated schemas?)