Broad Institute
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- lrma-aou2-panel-creation Public Forked from broadinstitute/lrma-aou1-panel-creation
Pipelines and evaluations covering integration, phasing, and imputation of short and structural variants for the AoU Phase 2 long-reads callset.
broadinstitute/lrma-aou2-panel-creation’s past year of commit activity - permutect Public
Permutect, an incredibly efficient deep learning architecture for somatic and germline variant calling
broadinstitute/permutect’s past year of commit activity - batch-e Public
Measuring and characterizing sequencing center batch effects in All of Us whole-genome sequencing data. Computes per-sample variant statistics across genomic interval classes and performs pairwise comparisons between sequencing centers, stratified by genetic ancestry, using Hail on Spark
broadinstitute/batch-e’s past year of commit activity - bican-mccarroll-manuscript1 Public
Scripts used to process data for the first McCarroll lab BICAN manuscript
broadinstitute/bican-mccarroll-manuscript1’s past year of commit activity - pe2loaddata Public
Script to parse a Phenix metadata XML file and generate a .CSV for CellProfiler's loaddata module
broadinstitute/pe2loaddata’s past year of commit activity - dig-dug-portal Public
broadinstitute/dig-dug-portal’s past year of commit activity - switch-hitter Public
Workflow to measure phasing switch error rates between an evaluation and truth callset across samples and chromosomes
broadinstitute/switch-hitter’s past year of commit activity
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