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@Deep-MI

Deep Medical Imaging Lab (PI Reuter)

Repositories of the Reuter DeepMI Lab

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  1. FastSurfer FastSurfer Public

    PyTorch implementation of FastSurferCNN

    Python 595 147

  2. FatSegNet FatSegNet Public

    Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI

    Python 25 13

  3. fsqc fsqc Public

    A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data

    Python 79 16

  4. LaPy LaPy Public

    Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)

    Python 103 17

  5. BrainPrint BrainPrint Public

    A python-only derivative of the original BrainPrint scripts

    Python 17 9

  6. olf-bulb-segmentation olf-bulb-segmentation Public

    Automated Olfactory Bulb Segmentation Pipeline for T2-Weighted MRI

    Python 11 3

Repositories

Showing 10 of 21 repositories
  • neurolit Public

    Neuro Lesion Inpainting Tool (neuroLIT / FastSurfer-LIT) for lesion inpainting e.g. for whole brain segmentation and cortical surface reconstruction in the presence of tumor, surgical cavities or other abnormalities

    Deep-MI/neurolit’s past year of commit activity
    Python 18 Apache-2.0 5 1 2 Updated Mar 31, 2026
  • WhipperSnapPy Public

    Publication-quality OpenGL surface renderer with overlays — off-screen, Jupyter, and GUI support

    Deep-MI/WhipperSnapPy’s past year of commit activity
    Python 2 MIT 9 0 0 Updated Mar 30, 2026
  • BrainPrint Public

    A python-only derivative of the original BrainPrint scripts

    Deep-MI/BrainPrint’s past year of commit activity
    Python 17 MIT 9 0 1 Updated Mar 30, 2026
  • LaPy Public

    Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)

    Deep-MI/LaPy’s past year of commit activity
    Python 103 MIT 17 2 2 Updated Mar 30, 2026
  • YODA Public

    You Only Denoise once or Average (YODA) - A diffusion-based 2.5D medical image translation model with noise-supression

    Deep-MI/YODA’s past year of commit activity
    Python 8 Apache-2.0 1 0 0 Updated Mar 20, 2026
  • fsqc Public

    A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data

    Deep-MI/fsqc’s past year of commit activity
    Python 79 MIT 16 1 0 Updated Mar 18, 2026
  • FastSurfer Public

    PyTorch implementation of FastSurferCNN

    Deep-MI/FastSurfer’s past year of commit activity
    Python 595 Apache-2.0 147 23 2 Updated Mar 18, 2026
  • hipsta Public

    HIPSTA - a python package for hippocampal shape and thickness analysis

    Deep-MI/hipsta’s past year of commit activity
    Python 6 MIT 2 0 1 Updated Mar 2, 2026
  • discusseg Public

    Source code for the flexible segmentation of diffusion-weighted MR images with DISCUSseg

    Deep-MI/discusseg’s past year of commit activity
    0 0 1 0 Updated Feb 25, 2026
  • Deep-MI.github.io Public

    Deep Medical Imaging Lab Webpage

    Deep-MI/Deep-MI.github.io’s past year of commit activity
    TeX 3 MIT 16 0 2 Updated Feb 18, 2026
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