Scheduled monthly dependency update for February by pyup-bot · Pull Request #172 · CellProfiling/cam_acq

pyup-bot · 2020-02-01T15:29:28Z

Update colorlog from 4.0.2 to 4.1.0.

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Links

PyPI: https://pypi.org/project/colorlog
Changelog: https://pyup.io/changelogs/colorlog/
Repo: https://github.com/borntyping/python-colorlog

Update jinja2 from 2.10.3 to 2.11.1.

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Links

PyPI: https://pypi.org/project/jinja2
Homepage: https://palletsprojects.com/p/jinja/

Update numpy from 1.17.3 to 1.18.1.

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Links

PyPI: https://pypi.org/project/numpy
Homepage: https://www.numpy.org

Update ruamel.yaml from 0.16.5 to 0.16.7.

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Links

PyPI: https://pypi.org/project/ruamel.yaml
Repo: https://bitbucket.org/ruamel/yaml

Update tox from 3.14.0 to 3.14.3.

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Links

PyPI: https://pypi.org/project/tox
Docs: http://tox.readthedocs.org

Update sphinx from 2.2.1 to 2.3.1.

Changelog

2.3.1

==============================

Dependencies
------------

Incompatible changes
--------------------

Deprecated
----------

Features added
--------------

Bugs fixed
----------

Testing
--------

2.3.0

=====================================

Incompatible changes
--------------------

* 6742: ``end-before`` option of :rst:dir:`literalinclude` directive does not
match the first line of the code block.
* 1331: Change default User-Agent header to ``&quot;Sphinx/X.Y.Z requests/X.Y.Z
python/X.Y.Z&quot;``.  It can be changed via :confval:`user_agent`.
* 6867: text: content of admonitions starts after a blank line

Deprecated
----------

* ``sphinx.builders.gettext.POHEADER``
* ``sphinx.io.SphinxStandaloneReader.app``
* ``sphinx.io.SphinxStandaloneReader.env``
* ``sphinx.util.texescape.tex_escape_map``
* ``sphinx.util.texescape.tex_hl_escape_map_new``
* ``sphinx.writers.latex.LaTeXTranslator.no_contractions``

Features added
--------------

* 6707: C++, support bit-fields.
* 267: html: Eliminate prompt characters of doctest block from copyable text
* 6548: html: Use favicon for OpenSearch if available
* 6729: html theme: agogo theme now supports ``rightsidebar`` option
* 6780: Add PEP-561 Support
* 6762: latex: Allow to load additonal LaTeX packages via ``extrapackages`` key
of :confval:`latex_elements`
* 1331: Add new config variable: :confval:`user_agent`
* 6000: LaTeX: have backslash also be an inline literal word wrap break
character
* 4186: LaTeX: Support upLaTeX as a new :confval:`latex_engine` (experimental)
* 6812: Improve a warning message when extensions are not parallel safe
* 6818: Improve Intersphinx performance for multiple remote inventories.
* 2546: apidoc: .so file support
* 6798: autosummary: emit ``autodoc-skip-member`` event on generating stub file
* 6483: i18n: make explicit titles in toctree translatable
* 6816: linkcheck: Add :confval:`linkcheck_auth` option to provide
authentication information when doing ``linkcheck`` builds
* 6872: linkcheck: Handles HTTP 308 Permanent Redirect
* 6613: html: Wrap section number in span tag
* 6781: gettext: Add :confval:`gettext_last_translator&#39; and
:confval:`gettext_language_team` to customize headers of POT file

Bugs fixed
----------

* 6668: LaTeX: Longtable before header has incorrect distance
(refs: `latex3/latex2e173`_)

.. _latex3/latex2e173: https://github.com/latex3/latex2e/issues/173
* 6618: LaTeX: Avoid section names at the end of a page
* 6738: LaTeX: Do not replace unicode characters by LaTeX macros on unicode
supported LaTeX engines: ¶, §, €, ∞, ±, →, ‣, –, superscript and subscript
digits go through &quot;as is&quot; (as default OpenType font supports them)
* 6704: linkcheck: Be defensive and handle newly defined HTTP error code
* 6806: linkcheck: Failure on parsing content
* 6655: image URLs containing ``data:`` causes gettext builder crashed
* 6584: i18n: Error when compiling message catalogs on Hindi
* 6718: i18n: KeyError is raised if section title and table title are same
* 6743: i18n: :confval:`rst_prolog` breaks the translation
* 6708: mathbase: Some deprecated functions have removed
* 6709: autodoc: mock object does not work as a class decorator
* 5070: epub: Wrong internal href fragment links
* 6712: Allow not to install sphinx.testing as runtime (mainly for ALT Linux)
* 6741: html: search result was broken with empty :confval:`html_file_suffix`
* 6001: LaTeX does not wrap long code lines at backslash character
* 6804: LaTeX: PDF build breaks if admonition of danger type contains
code-block long enough not to fit on one page
* 6809: LaTeX: code-block in a danger type admonition can easily spill over
bottom of page
* 6793: texinfo: Code examples broken following &quot;sidebar&quot;
* 6813: An orphan warning is emitted for included document on Windows.  Thanks
to drillan
* 6850: Fix smartypants module calls re.sub() with wrong options
* 6824: HTML search: If a search term is partially matched in the title and
fully matched in a text paragraph on the same page, the search does not
include this match.
* 6848: config.py shouldn&#39;t pop extensions from overrides
* 6867: text: extra spaces are inserted to hyphenated words on folding lines
* 6886: LaTeX: xelatex converts straight double quotes into right curly ones
(shows when :confval:`smartquotes` is ``False``)
* 6890: LaTeX: even with smartquotes off, PDF output transforms straight
quotes and consecutive hyphens into curly quotes and dashes
* 6876: LaTeX: multi-line display of authors on title page has ragged edges
* 6887: Sphinx crashes with docutils-0.16b0
* 6920: sphinx-build: A console message is wrongly highlighted
* 6900: sphinx-build: ``-D`` option does not considers ``0`` and ``1`` as a
boolean value

2.2.2

=====================================

Incompatible changes
--------------------

* 6803: For security reason of python, parallel mode is disabled on macOS and
Python3.8+

Bugs fixed
----------

* 6776: LaTeX: 2019-10-01 LaTeX release breaks :file:`sphinxcyrillic.sty`
* 6815: i18n: French, Hindi, Chinese, Japanese and Korean translation messages
has been broken
* 6803: parallel build causes AttributeError on macOS and Python3.8

Links

PyPI: https://pypi.org/project/sphinx
Changelog: https://pyup.io/changelogs/sphinx/
Homepage: http://sphinx-doc.org/

Update pydocstyle from 4.0.1 to 5.0.2.

The bot wasn't able to find a changelog for this release. Got an idea?

Links

PyPI: https://pypi.org/project/pydocstyle
Changelog: https://pyup.io/changelogs/pydocstyle/
Repo: https://github.com/PyCQA/pydocstyle/

Update pylint from 2.4.3 to 2.4.4.

Changelog

2.4.4

===========================
Release date: 2019-11-13

* Exempt all the names found in type annotations from ``unused-import``

The previous code was assuming that only ``typing`` names need to be
exempted, but we need to do that for the rest of the type comment
names as well.

Close 3112

* Relax type import detection for names that do not come from the ``typing`` module

Close 3191

Links

PyPI: https://pypi.org/project/pylint
Changelog: https://pyup.io/changelogs/pylint/
Repo: https://github.com/PyCQA/pylint

Update setuptools from 41.6.0 to 45.1.0.

Changelog

45.1.0

-------

* 1458: Add minimum sunset date and preamble to Python 2 warning.
* 1704: Set sys.argv[0] in setup script run by build_meta.__legacy__
* 1974: Add Python 3 Only Trove Classifier and remove universal wheel declaration for more complete transition from Python 2.

45.0.0

-------

* 1458: Drop support for Python 2. Setuptools now requires Python 3.5 or later. Install setuptools using pip &gt;=9 or pin to Setuptools &lt;45 to maintain 2.7 support.
* 1959: Fix for Python 4: replace unsafe six.PY3 with six.PY2

44.0.0

-------

* 1908: Drop support for Python 3.4.

43.0.0

-------

* 1634: Include ``pyproject.toml`` in source distribution by default. Projects relying on the previous behavior where ``pyproject.toml`` was excluded by default should stop relying on that behavior or add ``exclude pyproject.toml`` to their MANIFEST.in file.
* 1927: Setuptools once again declares &#39;setuptools&#39; in the ``build-system.requires`` and adds PEP 517 build support by declaring itself as the ``build-backend``. It additionally specifies ``build-system.backend-path`` to rely on itself for those builders that support it.

42.0.2

-------

* 1921: Fix support for easy_install&#39;s ``find-links`` option in ``setup.cfg``.
* 1922: Build dependencies (setup_requires and tests_require) now install transitive dependencies indicated by extras.

42.0.1

-------

* 1918: Fix regression in handling wheels compatibility tags.

42.0.0

-------

* 1830, 1909: Mark the easy_install script and setuptools command as deprecated, and use `pip &lt;https://pip.pypa.io/en/stable/&gt;`_ when available to fetch/build wheels for missing ``setup_requires``/``tests_require`` requirements, with the following differences in behavior:
* support for ``python_requires``
* better support for wheels (proper handling of priority with respect to PEP 425 tags)
* PEP 517/518 support
* eggs are not supported
* no support for the ``allow_hosts`` easy_install option (``index_url``/``find_links`` are still honored)
* pip environment variables are honored (and take precedence over easy_install options)
* 1898: Removed the &quot;upload&quot; and &quot;register&quot; commands in favor of `twine &lt;https://pypi.org/p/twine&gt;`_.
* 1767: Add support for the ``license_files`` option in ``setup.cfg`` to automatically
include multiple license files in a source distribution.
* 1829: Update handling of wheels compatibility tags:
* add support for manylinux2010
* fix use of removed &#39;m&#39; ABI flag in Python 3.8 on Windows
* 1861: Fix empty namespace package installation from wheel.
* 1877: Setuptools now exposes a new entry point hook &quot;setuptools.finalize_distribution_options&quot;, enabling plugins like `setuptools_scm &lt;https://pypi.org/project/setuptools_scm&gt;`_ to configure options on the distribution at finalization time.

Links

PyPI: https://pypi.org/project/setuptools
Changelog: https://pyup.io/changelogs/setuptools/
Repo: https://github.com/pypa/setuptools

Update twine from 2.0.0 to 3.1.1.

Changelog

3.1.1

* :bug:`548` Restore ``--non-interactive`` as a flag not expecting an
argument.

3.1.0

* :feature:`547` Add support for specifying ``--non-interactive`` as an
environment variable.

3.0.0

* :feature:`336` When a client certificate is indicated, all password
processing is disabled.
* :feature:`489` Add ``--non-interactive`` flag to abort upload rather than
interactively prompt if credentials are missing.
* :feature:`524` Twine now unconditionally requires the keyring library
and no longer supports uninstalling ``keyring`` as a means to disable
that functionality. Instead, use ``keyring --disable`` keyring functionality
if necessary.
* :feature:`518` Add Python 3.8 to classifiers.
* :bug:`332 major` More robust handling of server response in
``--skip-existing``

Links

PyPI: https://pypi.org/project/twine
Changelog: https://pyup.io/changelogs/twine/
Docs: https://twine.readthedocs.io/

Update wheel from 0.33.6 to 0.34.2.

Changelog

0.34.2

- Fixed installation of ``wheel`` from sdist on environments without Unicode
file name support

0.34.1

- Fixed installation of ``wheel`` from sdist which was broken due to a chicken
and egg problem with PEP 517 and setuptools_scm

0.34.0

- Dropped Python 3.4 support
- Added automatic platform tag detection for macOS binary wheels
(PR by Grzegorz Bokota)
- Added the ``--compression=`` option to the ``bdist_wheel`` command
- Fixed PyPy tag generation to work with the updated semantics (328)
- Updated project packaging and testing configuration for :pep:`517`
- Moved the contents of setup.py to setup.cfg
- Fixed duplicate RECORD file when using ``wheel pack`` on Windows
- Fixed bdist_wheel failing at cleanup on Windows with a read-only source tree
- Fixed ``wheel pack`` not respecting the existing build tag in ``WHEEL``
- Switched the project to use the &quot;src&quot; layout
- Switched to setuptools_scm_ for versioning

.. _setuptools_scm: https://github.com/pypa/setuptools_scm/

Links

PyPI: https://pypi.org/project/wheel
Changelog: https://pyup.io/changelogs/wheel/
Repo: https://github.com/pypa/wheel

Update pytest from 5.2.2 to 5.3.5.

The bot wasn't able to find a changelog for this release. Got an idea?

Links

PyPI: https://pypi.org/project/pytest
Homepage: https://docs.pytest.org/en/latest/

Update pytest-mock from 1.11.2 to 2.0.0.

Changelog

2.0.0

------------------

Breaking Changes
++++++++++++++++

* ``mocker.spy`` attributes for tracking returned values and raised exceptions of its spied functions
are now called ``spy_return`` and ``spy_exception``, instead of reusing the existing
``MagicMock`` attributes ``return_value`` and ``side_effect``.

Version ``1.13`` introduced a serious regression: after a spied function using ``mocker.spy``
raises an exception, further calls to the spy will not call the spied function,
always raising the first exception instead: assigning to ``side_effect`` causes
``unittest.mock`` to behave this way (`175`_).

* The deprecated ``mock`` alias to the ``mocker`` fixture has finally been removed.

.. _175: https://github.com/pytest-dev/pytest-mock/issues/175

1.13.0

-------------------

* The object returned by ``mocker.spy`` now also tracks any side effect
of the spied method/function.

1.12.1

-------------------

* Fix error if ``mocker.patch`` is used in code where the source file
is not available, for example stale ``.pyc`` files (`169`_).

.. _169: https://github.com/pytest-dev/pytest-mock/issues/169issuecomment-555729265

1.12.0

-------------------

* Now all patch functions also raise a ``ValueError`` when used
as a context-manager. Thanks `AlexGascon`_ for the PR (`168`_).

.. _AlexGascon: https://github.com/AlexGascon
.. _168: https://github.com/pytest-dev/pytest-mock/pull/168

Links

PyPI: https://pypi.org/project/pytest-mock
Changelog: https://pyup.io/changelogs/pytest-mock/
Repo: https://github.com/pytest-dev/pytest-mock/

Update pytest-timeout from 1.3.3 to 1.3.4.

The bot wasn't able to find a changelog for this release. Got an idea?

Links

pyup-bot and others added 15 commits February 4, 2020 10:47

Update colorlog from 4.0.2 to 4.1.0

ab4035e

Update jinja2 from 2.10.3 to 2.11.1

f858f64

Update numpy from 1.17.3 to 1.18.1

357170c

Update ruamel.yaml from 0.16.5 to 0.16.7

7d51a23

Update tox from 3.14.0 to 3.14.3

bd446ab

Update sphinx from 2.2.1 to 2.3.1

0a4eab8

Update pydocstyle from 4.0.1 to 5.0.2

351b23e

Update pylint from 2.4.3 to 2.4.4

4dd85aa

Update setuptools from 41.6.0 to 45.1.0

e0e7335

Update twine from 2.0.0 to 3.1.1

495e500

Update wheel from 0.33.6 to 0.34.2

b89548e

Update pytest from 5.2.2 to 5.3.5

2f810f2

Update pytest-mock from 1.11.2 to 2.0.0

eafac9d

Update pytest-timeout from 1.3.3 to 1.3.4

962ff0c

Ignore D401 for now

90c5e4b

MartinHjelmare force-pushed the pyup-scheduled-update-2020-02-01 branch from fd4d08d to 90c5e4b Compare February 4, 2020 10:08

MartinHjelmare merged commit d0ba844 into develop Feb 4, 2020

MartinHjelmare deleted the pyup-scheduled-update-2020-02-01 branch February 4, 2020 10:34

MartinHjelmare mentioned this pull request Feb 14, 2020

0.6.0 #174

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Scheduled monthly dependency update for February#172

Scheduled monthly dependency update for February#172
MartinHjelmare merged 15 commits intodevelopfrom
pyup-scheduled-update-2020-02-01

pyup-bot commented Feb 1, 2020

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pyup-bot commented Feb 1, 2020

Update colorlog from 4.0.2 to 4.1.0.

Update jinja2 from 2.10.3 to 2.11.1.

Update numpy from 1.17.3 to 1.18.1.

Update ruamel.yaml from 0.16.5 to 0.16.7.

Update tox from 3.14.0 to 3.14.3.

Update sphinx from 2.2.1 to 2.3.1.

2.3.1

2.3.0

2.2.2

Update pydocstyle from 4.0.1 to 5.0.2.

Update pylint from 2.4.3 to 2.4.4.

2.4.4

Update setuptools from 41.6.0 to 45.1.0.

45.1.0

45.0.0

44.0.0

43.0.0

42.0.2

42.0.1

42.0.0

Update twine from 2.0.0 to 3.1.1.

3.1.1

3.1.0

3.0.0

Update wheel from 0.33.6 to 0.34.2.

0.34.2

0.34.1

0.34.0

Update pytest from 5.2.2 to 5.3.5.

Update pytest-mock from 1.11.2 to 2.0.0.

2.0.0

1.13.0

1.12.1

1.12.0

Update pytest-timeout from 1.3.3 to 1.3.4.

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